HCHarmonic CleansingResearch Admin v3.0.1
Checking API…
← Public atlas
Database-backed research

Research dashboard

Current stage

The public atlas now reads entities, sources, and assertions from the API when the backend is running. Changes made here appear on refresh without editing JavaScript files.

  • Persistent local development database
  • PostgreSQL-ready SQLAlchemy model
  • CRUD API for research records
  • Evidence and inference validation
  • Admin research workflow

Publication discipline

Use G and UNVERIFIED whenever attribution is unresolved. Use CROSS_SYSTEM only for a project-created bridge, never to make a direct-source claim look stronger.

Knowledge graph nodes

Entities

Reusable anatomy editor

Hierarchy

Select a root, inspect descendants, or add a child without hand-building breadcrumb paths.

Entity tree

Selected node

Choose a node in the tree.

Provenance registry

Sources

Knowledge graph edges

Assertions

Publication quality control

Research QA

What this checks

QA flags assertions that still need provenance work before publication: missing sources, missing source locators, unreviewed records, low-confidence attribution, and cross-system bridges.

Deep anatomy slices

Knee v0.3 established exact substructure scope. Eye & vision v0.5 extends the same rule through retina → macula → fovea and the visual pathway. Ear, hearing & vestibular v0.6 adds outer/middle/inner ear anatomy and functional pathways. Nose, smell & olfactory v0.7 adds bilateral nasal anatomy, paranasal sinuses, standardized nose-region points, and the primary olfactory pathway. Mouth, teeth & taste v0.8 adds 32 individually addressable permanent teeth, dental tissues, periodontium, tongue/taste, salivary glands, TMJ, mouth/jaw points, and the gustatory pathway. Spine & segmental nervous system v0.9 adds individual vertebral levels, 23 discs, spinal cord terminal anatomy, all 31 spinal nerve levels, dermatomes, representative myotomes, back points, and source-scoped vertebral claims. Upper limb, hand & fingers v1.0 adds shoulder-to-digit anatomy, all carpal/metacarpal/phalangeal records, brachial-plexus terminal nerves, upper-limb dermatome landmarks, traditional points, and strict regional claim scope. Lower limb, foot & toes v1.1 adds hip-to-toe anatomy, seven tarsals, five metatarsals, fourteen phalanges per foot, lumbosacral/peripheral nerves, L2–S2 landmarks, lower-limb points, and source-scoped hip/foot claims. Torso & major internal organs v1.2 adds cardiovascular, respiratory, digestive and urinary system hierarchies, organ substructures, four new flow pathways, separate Zang-Fu namesakes, torso acupuncture overlays, and tissue-scoped alternative claims. Brain, cranial nerves & CNS v1.3 adds cerebral hemispheres/lobes, cortical regions, thalamus/hypothalamus, basal ganglia, limbic structures, brainstem, cerebellum, meninges, ventricular/CSF anatomy, all 12 canonical cranial nerves, and integrated motor/sensory pathways. Endocrine system & hormonal regulation v1.4 adds pituitary/pineal/thyroid/parathyroid/adrenal/islet/gonadal endocrine anatomy, a molecular hormone library, and seven major endocrine feedback-pathway views while keeping hormone physiology separate from symbolic correspondences. Reproductive system & reproductive physiology v1.5 adds detailed female and male reproductive anatomy, ovarian/uterine cycles, spermatogenesis and sperm transport, reuses the canonical ovary/testis records from the endocrine slice, and adds strict structure-scoped alternative claims.

Lymphatic & immune v1.6 adds lymphatic vessels/ducts, lymph-node microanatomy and regional node groups, thymus, bone marrow, tonsils/MALT, spleen immune integration, major immune-cell classes, and four immune/lymph functional pathways with strict source scope.

Skin, connective tissue & integument v1.7 adds epidermal/dermal layers, hypodermis, hair/pilosebaceous structures, eccrine/apocrine glands, nail anatomy, cutaneous receptors, connective tissue/fascia, wound-healing pathways, and exact source scope for epidermal/dermal/gland alternative claims.

Blood & hematology v1.8 adds plasma/serum, erythrocytes/leukocytes/platelets, marrow hematopoiesis, erythropoiesis, hemoglobin/oxygen transport, hemostasis/coagulation, ABO/Rh blood groups, and a direct scientific-vs-alternative evidence-conflict view for anemia/leukemia claims.

Autonomic nervous system & vascular/microcirculation v1.9 adds sympathetic, parasympathetic and enteric organization; autonomic ganglia, transmitters and receptors; vessel-wall layers; major arteries/veins; arterioles, capillaries and venules; and an integrated arterial baroreflex pathway connecting pressure sensing, cranial afferents, brainstem integration and autonomic control of the heart and vascular tone.

Whole-body skeletal & muscular completion v2.0 adds skeletal/muscular system roots, skull and thoracic-cage completion, bony pelvis, bone histology/remodeling, structural and synovial joint classes, skeletal-muscle microstructure, major axial/appendicular muscle groups, and integrated shoulder/elbow/knee/ankle movement pathways.

Rule: broader region claims are contextual only and never inherited automatically by a child structure.

Structured research ingestion

Bulk import

Import bundle

Load many entities, sources, and assertions at once. Preview validates IDs, references, source locators, and hierarchy cycles before anything is written.

Validation result

No import preview yet.

CSV headers

Entities: id,name,type,system,parent,aliases,description,laterality,claimScope

Sources: id,title,author,year,type,system,authority,note,url

Assertions: id,from_id,predicate,to_id,system,evidence,inference,causal,source_id,text,source_confidence,review_status,sourceLocator,scope

Backups & development

Export & maintenance

Export current research data

Download the database-backed entity, source, and assertion records as JSON.

Reset development database

Deletes admin edits and reloads the v3.0 research seed. This is intentionally protected by the same admin-token rule as other write actions.

Production migration

Set DATABASE_URL to a PostgreSQL connection string and install the PostgreSQL driver. The application code and API contract stay the same. Before public deployment, set HC_ADMIN_TOKEN and place the admin interface behind proper authentication/reverse-proxy controls.